The Future of Molecular Dynamics
SimbiosOpenMM
The Future of Molecular Dynamics
29:48
Exercise: Advanced OpenMM Features
SimbiosOpenMM
Exercise: Advanced OpenMM Features
30:37
Exercise: Performing Analysis with MDTraj
SimbiosOpenMM
Exercise: Performing Analysis with MDTraj
24:51
Introduction to Molecular Dynamics Trajectory Analysis and Markov State Models (MSM)
SimbiosOpenMM
Introduction to Molecular Dynamics Trajectory Analysis and Markov State Models (MSM)
32:58
Exercise: Heating and Constraining Particles to Simulate a Protein-Ligand System
SimbiosOpenMM
Exercise: Heating and Constraining Particles to Simulate a Protein-Ligand System
13:16
Introduction to Running Simulations with OpenMM
SimbiosOpenMM
Introduction to Running Simulations with OpenMM
13:04
Introduction to Molecular Dynamics Workflows and Tools
SimbiosOpenMM
Introduction to Molecular Dynamics Workflows and Tools
27:51
Introduction to Molecular Dynamics
SimbiosOpenMM
Introduction to Molecular Dynamics
37:59
Extracting Energies and Other Quantities from Simulations
SimbiosOpenMM
Extracting Energies and Other Quantities from Simulations
9:12
Validation of OpenMM
SimbiosOpenMM
Validation of OpenMM
7:53
Creating and Customizing Force Fields in OpenMM
SimbiosOpenMM
Creating and Customizing Force Fields in OpenMM
31:50
Customizing Forces and Integrators with OpenMM
SimbiosOpenMM
Customizing Forces and Integrators with OpenMM
23:14
Exercise: The Basics of OpenMM Molecular Dynamics Simulations
SimbiosOpenMM
Exercise: The Basics of OpenMM Molecular Dynamics Simulations
18:25
Introduction to the OpenMM API
SimbiosOpenMM
Introduction to the OpenMM API
44:21
Introduction to Running Simulations with OpenMM
SimbiosOpenMM
Introduction to Running Simulations with OpenMM
16:06
Exercises: Running Simulations with OpenMM
SimbiosOpenMM
Exercises: Running Simulations with OpenMM
20:55
Introduction to the OpenMM API
SimbiosOpenMM
Introduction to the OpenMM API
34:40
Customizing Forces and Integrators with OpenMM
SimbiosOpenMM
Customizing Forces and Integrators with OpenMM
19:50
Using AMOEBA Polarizable Force Fields
SimbiosOpenMM
Using AMOEBA Polarizable Force Fields
17:47
Validation of OpenMM
SimbiosOpenMM
Validation of OpenMM
15:07
Force Field Parameterization
SimbiosOpenMM
Force Field Parameterization
27:40
Introduction to Markov State Models for Trajectory Analysis
SimbiosOpenMM
Introduction to Markov State Models for Trajectory Analysis
19:53
Free Energy Calculations and OpenMM
SimbiosOpenMM
Free Energy Calculations and OpenMM
17:36
Introduction to Running Simulations with OpenMM
SimbiosOpenMM
Introduction to Running Simulations with OpenMM
18:37