Wk05 HW: How to interpret the autograder feedback.
Nolan Bentley
Wk05 HW: How to interpret the autograder feedback.
18:45
Wk04a-Lecture: Data cleaning and regex practice questions
Nolan Bentley
Wk04a-Lecture: Data cleaning and regex practice questions
34:50
Wk03b Script: Detailed breakdown of the data exploration functions.
Nolan Bentley
Wk03b Script: Detailed breakdown of the data exploration functions.
36:35
Wk03a-Lecture: Using logic and comparative operators in extractions
Nolan Bentley
Wk03a-Lecture: Using logic and comparative operators in extractions
46:57
Wk01b: Introduction to R script file full breakdown
Nolan Bentley
Wk01b: Introduction to R script file full breakdown
1:37:45
Removing rows randomly in Excel and R
Nolan Bentley
Removing rows randomly in Excel and R
16:16
DESeq2 Pipeline Overview for Fall 2025
Nolan Bentley
DESeq2 Pipeline Overview for Fall 2025
1:17:17
Exploring the GDC (Making cohorts)
Nolan Bentley
Exploring the GDC (Making cohorts)
38:35
Wk05b - Fun with Flow and Functions Script file explained.
Nolan Bentley
Wk05b - Fun with Flow and Functions Script file explained.
44:08
Wk05 Poll: Custom Functions
Nolan Bentley
Wk05 Poll: Custom Functions
16:17
Wk05a - Example of writing a function in R (myTimer)
Nolan Bentley
Wk05a - Example of writing a function in R (myTimer)
32:02
Wk04 Poll: Regular Expressions and Data Cleaning
Nolan Bentley
Wk04 Poll: Regular Expressions and Data Cleaning
27:43
Wk04a - Lecture supplementary video (Cleaning demo and questions)
Nolan Bentley
Wk04a - Lecture supplementary video (Cleaning demo and questions)
49:26
Wk03 Poll: Advanced Extractions and Comparisons
Nolan Bentley
Wk03 Poll: Advanced Extractions and Comparisons
57:02
Wk02 Poll: Data coercion and simple extractions
Nolan Bentley
Wk02 Poll: Data coercion and simple extractions
32:19
Wk01b Poll: Sequencing Technology
Nolan Bentley
Wk01b Poll: Sequencing Technology
13:42
Wk01b-Basics of R
Nolan Bentley
Wk01b-Basics of R
57:03
Wk05b-Class Function Problems
Nolan Bentley
Wk05b-Class Function Problems
33:34
Wk04-Poll: Partial string matching & Data cleaning
Nolan Bentley
Wk04-Poll: Partial string matching & Data cleaning
18:09
Wk02-Poll: Converting and extracting data
Nolan Bentley
Wk02-Poll: Converting and extracting data
27:08
Snow Day Part 2: Paths, Inputs/Outputs, and Data structures
Nolan Bentley
Snow Day Part 2: Paths, Inputs/Outputs, and Data structures
30:58
Snow Day Part 1: Functions, Arguments, Help files, and Tab completion
Nolan Bentley
Snow Day Part 1: Functions, Arguments, Help files, and Tab completion
39:22
Wk01-Poll: Sequencing technology questions
Nolan Bentley
Wk01-Poll: Sequencing technology questions
15:22
How to explore GDC and get grouping files (New version)
Nolan Bentley
How to explore GDC and get grouping files (New version)
42:54
2024c-Fall-Wk09: Database concepts
Nolan Bentley
2024c-Fall-Wk09: Database concepts
14:43
Midterm Review
Nolan Bentley
Midterm Review
59:42
Wk05b Poll: Functions reading practice (updated for Spring 2025)
Nolan Bentley
Wk05b Poll: Functions reading practice (updated for Spring 2025)
9:08
Wk05b - Function practice breakdown! (~Updated for Spring 2025)
Nolan Bentley
Wk05b - Function practice breakdown! (~Updated for Spring 2025)
56:45
In-class questions from Wk04b in Fall 2024
Nolan Bentley
In-class questions from Wk04b in Fall 2024
43:53
In-class questions from Wk04a in Fall 2024
Nolan Bentley
In-class questions from Wk04a in Fall 2024
23:32
2024c-Fall-Wk04-Poll: Data cleaning and regular expressions
Nolan Bentley
2024c-Fall-Wk04-Poll: Data cleaning and regular expressions
22:26
Wk03-Poll: Advanced extractions and comparisons (Updated from Spring 2025)
Nolan Bentley
Wk03-Poll: Advanced extractions and comparisons (Updated from Spring 2025)
34:35
2024c-Fall-Wk02-Poll: Data type conversions and extractions
Nolan Bentley
2024c-Fall-Wk02-Poll: Data type conversions and extractions
36:46
2024c-Fall-Wk01-Poll: Sequencing technology questions
Nolan Bentley
2024c-Fall-Wk01-Poll: Sequencing technology questions
14:15
Checking primer pairs across different assemblies via NCBI Primer BLAST
Nolan Bentley
Checking primer pairs across different assemblies via NCBI Primer BLAST
14:12
Polls2024a-Spring-Wk13: DE Analysis
Nolan Bentley
Polls2024a-Spring-Wk13: DE Analysis
17:15
2024a-Spring-Wk07-Midterm Review
Nolan Bentley
2024a-Spring-Wk07-Midterm Review
52:07
Wk06 Poll: ggplot2 activity (republished for Fall of 2025 from former semester)
Nolan Bentley
Wk06 Poll: ggplot2 activity (republished for Fall of 2025 from former semester)
45:06
Polls2024a-Spring-Wk05: Functions
Nolan Bentley
Polls2024a-Spring-Wk05: Functions
8:07
Polls2024a-Spring-Wk04: Data cleaning and regular expressions
Nolan Bentley
Polls2024a-Spring-Wk04: Data cleaning and regular expressions
13:04
Polls2024a-Spring-Wk03: Extraction questions
Nolan Bentley
Polls2024a-Spring-Wk03: Extraction questions
34:45
Polls2024a-Spring-Wk02: Data coercion and 1D extractions
Nolan Bentley
Polls2024a-Spring-Wk02: Data coercion and 1D extractions
19:17
Polls2024a-Spring-Wk01: Sequencing technology questions
Nolan Bentley
Polls2024a-Spring-Wk01: Sequencing technology questions
12:42
00: Exploring and obtaining sample data from the GDC (V1.3_Fall2023)
Nolan Bentley
00: Exploring and obtaining sample data from the GDC (V1.3_Fall2023)
21:19
Week06a-Lecture-Function practice questions
Nolan Bentley
Week06a-Lecture-Function practice questions
27:32
PollWk06b: gsub and functions
Nolan Bentley
PollWk06b: gsub and functions
23:37
Week05b-Lecture: If / else and loops extra practice.
Nolan Bentley
Week05b-Lecture: If / else and loops extra practice.
13:32
Week05-Lecture: Cleaning color data and making a pie chart
Nolan Bentley
Week05-Lecture: Cleaning color data and making a pie chart
28:41
PollWk05: Logic, gsub, and extractions / replacements
Nolan Bentley
PollWk05: Logic, gsub, and extractions / replacements
17:20
Week04b-PollQuestions-Logical and Relational Operators
Nolan Bentley
Week04b-PollQuestions-Logical and Relational Operators
12:36
Week04b-ClassActivity-ClassifyingExtractions
Nolan Bentley
Week04b-ClassActivity-ClassifyingExtractions
13:52
Week04a-Lecture-ExtraPractice-Extractions and Attributes
Nolan Bentley
Week04a-Lecture-ExtraPractice-Extractions and Attributes
44:10
Week04b-Warmup-Classifying extraction dimensionality
Nolan Bentley
Week04b-Warmup-Classifying extraction dimensionality
9:55
PollWk03: R syntax, coercions, and basic extractions
Nolan Bentley
PollWk03: R syntax, coercions, and basic extractions
23:02
Mega Demonstration
Nolan Bentley
Mega Demonstration
36:33
IGV Tutorial
Nolan Bentley
IGV Tutorial
12:54
PollWk02: UNIX-like interactions examples.
Nolan Bentley
PollWk02: UNIX-like interactions examples.
11:27
Linux-03: Hands-on filepaths and file manipulations
Nolan Bentley
Linux-03: Hands-on filepaths and file manipulations
24:26
Linux-02: An introduction to filepaths and file properties
Nolan Bentley
Linux-02: An introduction to filepaths and file properties
14:21
Linux-01: Shell interactions on a Linux-based operating system using Bash
Nolan Bentley
Linux-01: Shell interactions on a Linux-based operating system using Bash
23:46
Linux-00: An introduction to Linux/UNIX based operating systems
Nolan Bentley
Linux-00: An introduction to Linux/UNIX based operating systems
12:38