Why is QuPath slow?!? Sampling with VisualVM
Pete Bankhead
Why is QuPath slow?!? Sampling with VisualVM
5:42
Response to 'Cell Classification and Density Maps with QuPath'
Pete Bankhead
Response to 'Cell Classification and Density Maps with QuPath'
3:23
Response to 'Detecting (Positive) Cells with QuPath'
Pete Bankhead
Response to 'Detecting (Positive) Cells with QuPath'
14:48
1 - Image data & its display
Pete Bankhead
1 - Image data & its display
33:09
0 - Overview of 'Introduction to Bioimage Analysis'
Pete Bankhead
0 - Overview of 'Introduction to Bioimage Analysis'
4:22
QuPath script - Create surrounding annotation
Pete Bankhead
QuPath script - Create surrounding annotation
1:48
Transferring annotations between images in QuPath v0.4.0
Pete Bankhead
Transferring annotations between images in QuPath v0.4.0
1:04
QuPath for Fiji Users (I2K 2022 workshop)
Pete Bankhead
QuPath for Fiji Users (I2K 2022 workshop)
1:16:59
32 - Finishing up
Pete Bankhead
32 - Finishing up
0:30
28 - Scripting the analysis
Pete Bankhead
28 - Scripting the analysis
2:30
29 - Remembering to select
Pete Bankhead
29 - Remembering to select
3:31
30 - Batch processing
Pete Bankhead
30 - Batch processing
3:05
31 - Simple tissue detection
Pete Bankhead
31 - Simple tissue detection
1:38
27 - Finishing one image
Pete Bankhead
27 - Finishing one image
1:32
26 Applying intensity classifications
Pete Bankhead
26 Applying intensity classifications
3:19
25 - Revisiting past mistakes
Pete Bankhead
25 - Revisiting past mistakes
0:42
24 - Toggle displaying classes
Pete Bankhead
24 - Toggle displaying classes
0:41
22 - Training a cell classifier
Pete Bankhead
22 - Training a cell classifier
5:11
23 - More classifier suggestions
Pete Bankhead
23 - More classifier suggestions
1:14
21 - Smoothed measurements
Pete Bankhead
21 - Smoothed measurements
2:42
19 - Measurement maps
Pete Bankhead
19 - Measurement maps
1:13
20 - Displaying cells
Pete Bankhead
20 - Displaying cells
0:31
17 - A click too far
Pete Bankhead
17 - A click too far
1:24
15 - Recovering parameters from the Workflow history
Pete Bankhead
15 - Recovering parameters from the Workflow history
1:51
18 - Learning lessons or not
Pete Bankhead
18 - Learning lessons or not
2:09
16 - Local measurements and the object hierarchy
Pete Bankhead
16 - Local measurements and the object hierarchy
1:13
14 - Other cell detection parameters
Pete Bankhead
14 - Other cell detection parameters
0:49
13 - Cell expansion
Pete Bankhead
13 - Cell expansion
2:25
12 - Avoiding non nuclear staining
Pete Bankhead
12 - Avoiding non nuclear staining
0:40
11 - Split by shape
Pete Bankhead
11 - Split by shape
0:25
10 - Avoiding tissue folds
Pete Bankhead
10 - Avoiding tissue folds
0:52
9 - Cell size filters
Pete Bankhead
9 - Cell size filters
0:41
7 - Thresholds and background
Pete Bankhead
7 - Thresholds and background
6:48
8 - Smoothing and fragmented nuclei
Pete Bankhead
8 - Smoothing and fragmented nuclei
3:51
6 - Requested pixel size
Pete Bankhead
6 - Requested pixel size
4:10
5 - Choosing the detection image
Pete Bankhead
5 - Choosing the detection image
2:43
4 - Cell detection vs Positive cell detection
Pete Bankhead
4 - Cell detection vs Positive cell detection
4:07
3 - Command List
Pete Bankhead
3 - Command List
1:16
2 - Setting stain vectors
Pete Bankhead
2 - Setting stain vectors
8:17
1 - Introduction to QuPath for IHC analysis
Pete Bankhead
1 - Introduction to QuPath for IHC analysis
0:55
2 - Opening images, viewing properties
Pete Bankhead
2 - Opening images, viewing properties
4:19
3 - Creating Projects
Pete Bankhead
3 - Creating Projects
6:07
4 - Simple annotations
Pete Bankhead
4 - Simple annotations
6:04
5 - Brush and wand
Pete Bankhead
5 - Brush and wand
5:10
6 - The Object hierarchy
Pete Bankhead
6 - The Object hierarchy
3:08
7 - Save and revert
Pete Bankhead
7 - Save and revert
1:31
8 - Counting
Pete Bankhead
8 - Counting
3:40
9 - Brightness, contrast & color transforms
Pete Bankhead
9 - Brightness, contrast & color transforms
2:38
10 - View magnification
Pete Bankhead
10 - View magnification
0:52
11 - Showing and hiding
Pete Bankhead
11 - Showing and hiding
1:21
12 - QuPath and ImageJ
Pete Bankhead
12 - QuPath and ImageJ
2:36
1 - QuPath tutorial introduction
Pete Bankhead
1 - QuPath tutorial introduction
1:34
QuPath for Ki67
Pete Bankhead
QuPath for Ki67
2:01
QuPath for H&E
Pete Bankhead
QuPath for H&E
7:38
QuPath in 5 minutes
Pete Bankhead
QuPath in 5 minutes
5:00